LICENSE
MANIFEST.in
README.md
setup.cfg
setup.py
versioneer.py
q2_types_genomics/__init__.py
q2_types_genomics/_version.py
q2_types_genomics/citations.bib
q2_types_genomics/plugin_setup.py
q2_types_genomics.egg-info/PKG-INFO
q2_types_genomics.egg-info/SOURCES.txt
q2_types_genomics.egg-info/dependency_links.txt
q2_types_genomics.egg-info/entry_points.txt
q2_types_genomics.egg-info/not-zip-safe
q2_types_genomics.egg-info/top_level.txt
q2_types_genomics/feature_data/__init__.py
q2_types_genomics/feature_data/_format.py
q2_types_genomics/feature_data/_transformer.py
q2_types_genomics/feature_data/_type.py
q2_types_genomics/feature_data/tests/__init__.py
q2_types_genomics/feature_data/tests/test_format.py
q2_types_genomics/feature_data/tests/test_transformers.py
q2_types_genomics/feature_data/tests/test_type.py
q2_types_genomics/feature_data/tests/data/mags-fa/mag1.fa
q2_types_genomics/feature_data/tests/data/mags-fa/mag2.fa
q2_types_genomics/feature_data/tests/data/mags-fa/mag3.fa
q2_types_genomics/feature_data/tests/data/mags-fasta/mag1.fasta
q2_types_genomics/feature_data/tests/data/mags-fasta/mag2.fasta
q2_types_genomics/genome_data/__init__.py
q2_types_genomics/genome_data/_format.py
q2_types_genomics/genome_data/_transformer.py
q2_types_genomics/genome_data/_type.py
q2_types_genomics/genome_data/tests/__init__.py
q2_types_genomics/genome_data/tests/test_format.py
q2_types_genomics/genome_data/tests/test_transformer.py
q2_types_genomics/genome_data/tests/test_type.py
q2_types_genomics/genome_data/tests/data/genes/genes1.fa
q2_types_genomics/genome_data/tests/data/genes/genes2.fa
q2_types_genomics/genome_data/tests/data/loci/loci1.gff
q2_types_genomics/genome_data/tests/data/loci/loci2.gff
q2_types_genomics/genome_data/tests/data/loci-invalid/loci-corrupt.gff
q2_types_genomics/genome_data/tests/data/loci-invalid/loci-directive-empty.gff
q2_types_genomics/genome_data/tests/data/loci-invalid/loci-empty-feature.gff
q2_types_genomics/genome_data/tests/data/loci-invalid/loci-invalid-char.gff
q2_types_genomics/genome_data/tests/data/loci-invalid/loci-invalid-phase.gff
q2_types_genomics/genome_data/tests/data/loci-invalid/loci-invalid-start.gff
q2_types_genomics/genome_data/tests/data/loci-invalid/loci-invalid-strand.gff
q2_types_genomics/genome_data/tests/data/loci-invalid/loci-lines-unequal.gff
q2_types_genomics/genome_data/tests/data/loci-invalid/loci-negative-start.gff
q2_types_genomics/genome_data/tests/data/loci-invalid/loci-no-version.gff
q2_types_genomics/genome_data/tests/data/loci-invalid/loci-wrong-version.gff
q2_types_genomics/genome_data/tests/data/proteins/proteins1.faa
q2_types_genomics/genome_data/tests/data/proteins/proteins2.faa
q2_types_genomics/per_sample_data/__init__.py
q2_types_genomics/per_sample_data/_format.py
q2_types_genomics/per_sample_data/_transformer.py
q2_types_genomics/per_sample_data/_type.py
q2_types_genomics/per_sample_data/_util.py
q2_types_genomics/per_sample_data/tests/__init__.py
q2_types_genomics/per_sample_data/tests/test_format.py
q2_types_genomics/per_sample_data/tests/test_transformers.py
q2_types_genomics/per_sample_data/tests/test_type.py
q2_types_genomics/per_sample_data/tests/data/bowtie/index-unorganized/contigs.1.bt2
q2_types_genomics/per_sample_data/tests/data/bowtie/index-unorganized/contigs.2.bt2
q2_types_genomics/per_sample_data/tests/data/bowtie/index-unorganized/contigs.3.bt2
q2_types_genomics/per_sample_data/tests/data/bowtie/index-unorganized/contigs.4.bt2
q2_types_genomics/per_sample_data/tests/data/bowtie/index-unorganized/contigs.rev.1.bt2
q2_types_genomics/per_sample_data/tests/data/bowtie/index-unorganized/contigs.rev.2.bt2
q2_types_genomics/per_sample_data/tests/data/bowtie/index-valid/sample1/mag1/contigs.1.bt2
q2_types_genomics/per_sample_data/tests/data/bowtie/index-valid/sample1/mag1/contigs.2.bt2
q2_types_genomics/per_sample_data/tests/data/bowtie/index-valid/sample1/mag1/contigs.3.bt2
q2_types_genomics/per_sample_data/tests/data/bowtie/index-valid/sample1/mag1/contigs.4.bt2
q2_types_genomics/per_sample_data/tests/data/bowtie/index-valid/sample1/mag1/contigs.rev.1.bt2
q2_types_genomics/per_sample_data/tests/data/bowtie/index-valid/sample1/mag1/contigs.rev.2.bt2
q2_types_genomics/per_sample_data/tests/data/bowtie/index-valid/sample2/mag1/contigs.1.bt2
q2_types_genomics/per_sample_data/tests/data/bowtie/index-valid/sample2/mag1/contigs.2.bt2
q2_types_genomics/per_sample_data/tests/data/bowtie/index-valid/sample2/mag1/contigs.3.bt2
q2_types_genomics/per_sample_data/tests/data/bowtie/index-valid/sample2/mag1/contigs.4.bt2
q2_types_genomics/per_sample_data/tests/data/bowtie/index-valid/sample2/mag1/contigs.rev.1.bt2
q2_types_genomics/per_sample_data/tests/data/bowtie/index-valid/sample2/mag1/contigs.rev.2.bt2
q2_types_genomics/per_sample_data/tests/data/bowtie/maps-invalid/sample1.bam
q2_types_genomics/per_sample_data/tests/data/bowtie/maps-invalid/sample2.bam
q2_types_genomics/per_sample_data/tests/data/bowtie/maps-multi/sample1/map1.bam
q2_types_genomics/per_sample_data/tests/data/bowtie/maps-multi/sample1/map2.bam
q2_types_genomics/per_sample_data/tests/data/bowtie/maps-multi/sample2/map1.bam
q2_types_genomics/per_sample_data/tests/data/bowtie/maps-multi/sample2/map2.bam
q2_types_genomics/per_sample_data/tests/data/bowtie/maps-single/sample1.bam
q2_types_genomics/per_sample_data/tests/data/bowtie/maps-single/sample2.bam
q2_types_genomics/per_sample_data/tests/data/contigs/sample1_contigs.fa
q2_types_genomics/per_sample_data/tests/data/contigs/sample2_contigs.fa
q2_types_genomics/per_sample_data/tests/data/contigs/sample3_contigs.fa
q2_types_genomics/per_sample_data/tests/data/mags/mags-fa/sample1/mag1.fa
q2_types_genomics/per_sample_data/tests/data/mags/mags-fa/sample1/mag2.fa
q2_types_genomics/per_sample_data/tests/data/mags/mags-fa/sample1/mag3.fa
q2_types_genomics/per_sample_data/tests/data/mags/mags-fa/sample2/mag1.fa
q2_types_genomics/per_sample_data/tests/data/mags/mags-fa/sample2/mag2.fa
q2_types_genomics/per_sample_data/tests/data/mags/mags-fasta/sample1/mag1.fasta
q2_types_genomics/per_sample_data/tests/data/mags/mags-fasta/sample1/mag2.fasta
q2_types_genomics/per_sample_data/tests/data/mags/mags-fasta/sample1/mag3.fasta
q2_types_genomics/per_sample_data/tests/data/mags/mags-fasta/sample2/mag1.fasta
q2_types_genomics/per_sample_data/tests/data/mags/mags-fasta/sample2/mag2.fasta
q2_types_genomics/per_sample_data/tests/data/mags/mags-unorganized/mag1.fa
q2_types_genomics/per_sample_data/tests/data/mags/mags-unorganized/mag2.fa
q2_types_genomics/per_sample_data/tests/data/manifests/MANIFEST-empty
q2_types_genomics/per_sample_data/tests/data/manifests/MANIFEST-mags-fa
q2_types_genomics/per_sample_data/tests/data/manifests/MANIFEST-missing-column
q2_types_genomics/per_sample_data/tests/data/manifests/MANIFEST-missing-filepath
q2_types_genomics/per_sample_data/tests/data/manifests/MANIFEST-no-samples