@InProceedings{ mckinney-proc-scipy-2010,
  author    = { Wes McKinney },
  title     = { Data Structures for Statistical Computing in Python },
  booktitle = { Proceedings of the 9th Python in Science Conference },
  pages     = { 51 -- 56 },
  year      = { 2010 },
  editor    = { St{\'e}fan van der Walt and Jarrod Millman }
}

@article{wood2019,
	title = {Improved metagenomic analysis with {Kraken} 2},
	volume = {20},
	issn = {1474-760X},
	url = {https://doi.org/10.1186/s13059-019-1891-0},
	doi = {10.1186/s13059-019-1891-0},
	abstract = {Although Kraken’s k-mer-based approach provides a fast taxonomic classification of metagenomic sequence data, its large memory requirements can be limiting for some applications. Kraken 2 improves upon Kraken 1 by reducing memory usage by 85\%, allowing greater amounts of reference genomic data to be used, while maintaining high accuracy and increasing speed fivefold. Kraken 2 also introduces a translated search mode, providing increased sensitivity in viral metagenomics analysis.},
	number = {1},
	urldate = {2023-01-17},
	journal = {Genome Biology},
	author = {Wood, Derrick E. and Lu, Jennifer and Langmead, Ben},
	month = {nov},
	year = {2019},
	keywords = {Alignment-free methods, Metagenomics, Metagenomics classification, Microbiome, Minimizers, Probabilistic data structures},
	pages = {257},
}

@article{lu2017,
  title = {Bracken: Estimating Species Abundance in Metagenomics Data},
  shorttitle = {Bracken},
  author = {Lu, Jennifer and Breitwieser, Florian P. and Thielen, Peter and Salzberg, Steven L.},
  year = {2017},
  month = jan,
  journal = {PeerJ Computer Science},
  volume = {3},
  pages = {e104},
  publisher = {{PeerJ Inc.}},
  issn = {2376-5992},
  doi = {10.7717/peerj-cs.104},
}

@article{kang2019,
  title = {{{MetaBAT}} 2: {{An}} Adaptive Binning Algorithm for Robust and Efficient Genome Reconstruction from Metagenome Assemblies},
  author = {Kang, Dongwan D. and Li, Feng and Kirton, Edward and Thomas, Ashleigh and Egan, Rob and An, Hong and Wang, Zhong},
  year = {2019},
  journal = {PeerJ},
  volume = {2019},
  number = {7},
  publisher = {{PeerJ Inc.}},
  issn = {21678359},
  doi = {10.7717/peerj.7359},
  keywords = {Clustering,Metagenome binning,Metagenomics}
}
