LICENSE
MANIFEST.in
README.md
setup.cfg
setup.py
versioneer.py
q2_dada2/__init__.py
q2_dada2/_denoise.py
q2_dada2/_examples.py
q2_dada2/_stats.py
q2_dada2/_transformer.py
q2_dada2/_version.py
q2_dada2/citations.bib
q2_dada2/plugin_setup.py
q2_dada2.egg-info/PKG-INFO
q2_dada2.egg-info/SOURCES.txt
q2_dada2.egg-info/dependency_links.txt
q2_dada2.egg-info/entry_points.txt
q2_dada2.egg-info/not-zip-safe
q2_dada2.egg-info/top_level.txt
q2_dada2/assets/run_dada.R
q2_dada2/tests/__init__.py
q2_dada2/tests/test_denoise.py
q2_dada2/tests/test_stats.py
q2_dada2/tests/data/no_asvs.tsv
q2_dada2/tests/data/single_feature.tsv
q2_dada2/tests/data/expected/ccs-default-stats.tsv
q2_dada2/tests/data/expected/ccs-default.fasta
q2_dada2/tests/data/expected/ccs-default.tsv
q2_dada2/tests/data/expected/paired-default-stats.tsv
q2_dada2/tests/data/expected/paired-default.fasta
q2_dada2/tests/data/expected/paired-default.tsv
q2_dada2/tests/data/expected/paired-override-stats.tsv
q2_dada2/tests/data/expected/paired-override.fasta
q2_dada2/tests/data/expected/paired-override.tsv
q2_dada2/tests/data/expected/paired-remove-empty-default.tsv
q2_dada2/tests/data/expected/pyro-default-stats.tsv
q2_dada2/tests/data/expected/pyro-default.fasta
q2_dada2/tests/data/expected/pyro-default.tsv
q2_dada2/tests/data/expected/single-default-stats.tsv
q2_dada2/tests/data/expected/single-default.fasta
q2_dada2/tests/data/expected/single-default.tsv
q2_dada2/tests/data/expected/single-override-stats.tsv
q2_dada2/tests/data/expected/single-override.fasta
q2_dada2/tests/data/expected/single-override.tsv
q2_dada2/tests/data/expected/single-pseudo-stats.tsv
q2_dada2/tests/data/expected/single-pseudo.fasta
q2_dada2/tests/data/expected/single-pseudo.tsv
q2_dada2/tests/data/expected/stats-format.tsv
q2_dada2/tests/data/expected/underscore-samples-stats.tsv
q2_dada2/tests/data/expected/underscore-samples.fasta
q2_dada2/tests/data/expected/underscore-samples.tsv
q2_dada2/tests/data/mixed_barcodes_and_ids/MANIFEST
q2_dada2/tests/data/mixed_barcodes_and_ids/V130_166_L001_R1_001.fastq.gz
q2_dada2/tests/data/mixed_barcodes_and_ids/V130_2_167_L001_R1_001.fastq.gz
q2_dada2/tests/data/mixed_barcodes_and_ids/V130_2_743_L001_R2_001.fastq.gz
q2_dada2/tests/data/mixed_barcodes_and_ids/V130_742_L001_R2_001.fastq.gz
q2_dada2/tests/data/mixed_barcodes_and_ids/metadata.yml
q2_dada2/tests/data/sample_seqs_ccs/MANIFEST
q2_dada2/tests/data/sample_seqs_ccs/R11_1_P2C2_8_L001_R1_001.fastq.gz
q2_dada2/tests/data/sample_seqs_ccs/R3_1_P2C2_2_L001_R1_001.fastq.gz
q2_dada2/tests/data/sample_seqs_ccs/R3_2_P2C2_3_L001_R1_001.fastq.gz
q2_dada2/tests/data/sample_seqs_ccs/R3_3_P2C2_0_L001_R1_001.fastq.gz
q2_dada2/tests/data/sample_seqs_ccs/R9_1B_P2C2_6_L001_R1_001.fastq.gz
q2_dada2/tests/data/sample_seqs_ccs/R9_1_P2C2_1_L001_R1_001.fastq.gz
q2_dada2/tests/data/sample_seqs_ccs/R9_2_P2C2_7_L001_R1_001.fastq.gz
q2_dada2/tests/data/sample_seqs_ccs/R9_3_P2C2_4_L001_R1_001.fastq.gz
q2_dada2/tests/data/sample_seqs_ccs/R9_4_P2C2_5_L001_R1_001.fastq.gz
q2_dada2/tests/data/sample_seqs_paired/BAQ2420.2_10_L001_R1_001.fastq.gz
q2_dada2/tests/data/sample_seqs_paired/BAQ2420.2_11_L001_R2_001.fastq.gz
q2_dada2/tests/data/sample_seqs_paired/BAQ3473.2_0_L001_R1_001.fastq.gz
q2_dada2/tests/data/sample_seqs_paired/BAQ3473.2_1_L001_R2_001.fastq.gz
q2_dada2/tests/data/sample_seqs_paired/BAQ3473.3_2_L001_R1_001.fastq.gz
q2_dada2/tests/data/sample_seqs_paired/BAQ3473.3_3_L001_R2_001.fastq.gz
q2_dada2/tests/data/sample_seqs_paired/BAQ4166.2_4_L001_R1_001.fastq.gz
q2_dada2/tests/data/sample_seqs_paired/BAQ4166.2_5_L001_R2_001.fastq.gz
q2_dada2/tests/data/sample_seqs_paired/BAQ4166.3_14_L001_R1_001.fastq.gz
q2_dada2/tests/data/sample_seqs_paired/BAQ4166.3_15_L001_R2_001.fastq.gz
q2_dada2/tests/data/sample_seqs_paired/BLANK_20_L001_R1_001.fastq.gz
q2_dada2/tests/data/sample_seqs_paired/BLANK_21_L001_R2_001.fastq.gz
q2_dada2/tests/data/sample_seqs_paired/MANIFEST
q2_dada2/tests/data/sample_seqs_paired/PAP130.2_6_L001_R1_001.fastq.gz
q2_dada2/tests/data/sample_seqs_paired/PAP130.2_7_L001_R2_001.fastq.gz
q2_dada2/tests/data/sample_seqs_paired/YUN1005.3_16_L001_R1_001.fastq.gz
q2_dada2/tests/data/sample_seqs_paired/YUN1005.3_17_L001_R2_001.fastq.gz
q2_dada2/tests/data/sample_seqs_paired/YUN1242.1_8_L001_R1_001.fastq.gz
q2_dada2/tests/data/sample_seqs_paired/YUN1242.1_9_L001_R2_001.fastq.gz
q2_dada2/tests/data/sample_seqs_paired/YUN1242.3_12_L001_R1_001.fastq.gz
q2_dada2/tests/data/sample_seqs_paired/YUN1242.3_13_L001_R2_001.fastq.gz
q2_dada2/tests/data/sample_seqs_paired/YUN3153.3_18_L001_R1_001.fastq.gz
q2_dada2/tests/data/sample_seqs_paired/YUN3153.3_19_L001_R2_001.fastq.gz
q2_dada2/tests/data/sample_seqs_paired/metadata.yml
q2_dada2/tests/data/sample_seqs_single/L1S208_10_L001_R1_001.fastq.gz
q2_dada2/tests/data/sample_seqs_single/L1S257_11_L001_R1_001.fastq.gz
q2_dada2/tests/data/sample_seqs_single/L1S57_13_L001_R1_001.fastq.gz
q2_dada2/tests/data/sample_seqs_single/L1S76_12_L001_R1_001.fastq.gz
q2_dada2/tests/data/sample_seqs_single/L2S155_25_L001_R1_001.fastq.gz
q2_dada2/tests/data/sample_seqs_single/L2S175_27_L001_R1_001.fastq.gz
q2_dada2/tests/data/sample_seqs_single/L2S309_33_L001_R1_001.fastq.gz
q2_dada2/tests/data/sample_seqs_single/L2S357_15_L001_R1_001.fastq.gz
q2_dada2/tests/data/sample_seqs_single/L3S294_16_L001_R1_001.fastq.gz
q2_dada2/tests/data/sample_seqs_single/L3S313_32_L001_R1_001.fastq.gz
q2_dada2/tests/data/sample_seqs_single/L4S112_26_L001_R1_001.fastq.gz
q2_dada2/tests/data/sample_seqs_single/L4S63_31_L001_R1_001.fastq.gz
q2_dada2/tests/data/sample_seqs_single/L5S155_2_L001_R1_001.fastq.gz
q2_dada2/tests/data/sample_seqs_single/L5S174_29_L001_R1_001.fastq.gz
q2_dada2/tests/data/sample_seqs_single/L6S20_20_L001_R1_001.fastq.gz
q2_dada2/tests/data/sample_seqs_single/L6S68_30_L001_R1_001.fastq.gz
q2_dada2/tests/data/sample_seqs_single/MANIFEST
q2_dada2/tests/data/sample_seqs_single/metadata.yml
q2_dada2/tests/data/underscore_samples/L1_S208_10_L001_R1_001.fastq.gz
q2_dada2/tests/data/underscore_samples/L1_S257_11_L001_R1_001.fastq.gz
q2_dada2/tests/data/underscore_samples/L1_S57_13_L001_R1_001.fastq.gz
q2_dada2/tests/data/underscore_samples/L1_S76_12_L001_R1_001.fastq.gz
q2_dada2/tests/data/underscore_samples/L2_S155_25_L001_R1_001.fastq.gz
q2_dada2/tests/data/underscore_samples/L2_S175_27_L001_R1_001.fastq.gz
q2_dada2/tests/data/underscore_samples/L2_S309_33_L001_R1_001.fastq.gz
q2_dada2/tests/data/underscore_samples/L2_S357_15_L001_R1_001.fastq.gz
q2_dada2/tests/data/underscore_samples/L3_S294_16_L001_R1_001.fastq.gz
q2_dada2/tests/data/underscore_samples/L3_S313_32_L001_R1_001.fastq.gz
q2_dada2/tests/data/underscore_samples/L4_S112_26_L001_R1_001.fastq.gz
q2_dada2/tests/data/underscore_samples/L4_S63_31_L001_R1_001.fastq.gz
q2_dada2/tests/data/underscore_samples/L5_S155_2_L001_R1_001.fastq.gz
q2_dada2/tests/data/underscore_samples/L5_S174_29_L001_R1_001.fastq.gz
q2_dada2/tests/data/underscore_samples/L6_S20_20_L001_R1_001.fastq.gz
q2_dada2/tests/data/underscore_samples/L6_S68_30_L001_R1_001.fastq.gz
q2_dada2/tests/data/underscore_samples/MANIFEST
q2_dada2/tests/data/underscore_samples/metadata.yml