LICENSE
MANIFEST.in
README.md
setup.cfg
setup.py
versioneer.py
rescript/__init__.py
rescript/_utilities.py
rescript/_version.py
rescript/citations.bib
rescript/cross_validate.py
rescript/degap.py
rescript/dereplicate.py
rescript/edit_taxonomy.py
rescript/evaluate.py
rescript/extract_seq_segments.py
rescript/filter_length.py
rescript/get_data.py
rescript/get_gtdb.py
rescript/get_unite.py
rescript/merge.py
rescript/ncbi.py
rescript/ncbi_datasets.py
rescript/orient.py
rescript/parse_silva_taxonomy.py
rescript/plugin_setup.py
rescript/screenseq.py
rescript/subsample.py
rescript/trim_alignment.py
rescript.egg-info/PKG-INFO
rescript.egg-info/SOURCES.txt
rescript.egg-info/dependency_links.txt
rescript.egg-info/entry_points.txt
rescript.egg-info/not-zip-safe
rescript.egg-info/top_level.txt
rescript/assets/index.html
rescript/tests/__init__.py
rescript/tests/test_cross_validate.py
rescript/tests/test_degap.py
rescript/tests/test_derep.py
rescript/tests/test_edit_taxonomy.py
rescript/tests/test_evaluate.py
rescript/tests/test_extract_seq_segments.py
rescript/tests/test_filter_length.py
rescript/tests/test_get_data.py
rescript/tests/test_get_gtdb.py
rescript/tests/test_get_unite.py
rescript/tests/test_merge.py
rescript/tests/test_ncbi.py
rescript/tests/test_ncbi_datasets.py
rescript/tests/test_orient.py
rescript/tests/test_parse_silva_taxonomy.py
rescript/tests/test_screenseq.py
rescript/tests/test_subsample.py
rescript/tests/test_trim_alignment.py
rescript/tests/data/bakers-yeast.fasta
rescript/tests/data/bakers-yeast.tsv
rescript/tests/data/cleanseq-test-1-rna.fasta
rescript/tests/data/cleanseq-test-1.fasta
rescript/tests/data/degap-test-alignment.fasta
rescript/tests/data/derep-taxa-numericIDs.tsv
rescript/tests/data/derep-taxa.tsv
rescript/tests/data/derep-test-fungi.fasta
rescript/tests/data/derep-test-fungi.tsv
rescript/tests/data/derep-test-numericIDs.fasta
rescript/tests/data/derep-test.fasta
rescript/tests/data/escherichia_shigella_taxonomy.txt
rescript/tests/data/full-length-query.fasta
rescript/tests/data/gtdb-seqs-archaea.fasta
rescript/tests/data/gtdb-seqs-bacteria.fasta
rescript/tests/data/gtdb-seqs.fasta
rescript/tests/data/gtdb-tax.tsv
rescript/tests/data/gtdb-taxa-archaea.tsv
rescript/tests/data/gtdb-taxa-bacteria.tsv
rescript/tests/data/mixed-orientations-rc.fasta
rescript/tests/data/mixed-orientations.fasta
rescript/tests/data/ncbi-responses.pkl
rescript/tests/data/ncbi-seqs-protein.fasta
rescript/tests/data/ncbi-seqs.fasta
rescript/tests/data/ncbi-taxa-protein.tsv
rescript/tests/data/ncbi-taxa.tsv
rescript/tests/data/ns-ncbi-taxa.tsv
rescript/tests/data/real-taxa-test.tsv
rescript/tests/data/ref-segs.fasta
rescript/tests/data/taxid_tree.tre
rescript/tests/data/taxid_tree_missing_id.tre
rescript/tests/data/taxmap_test_match_tree.txt
rescript/tests/data/taxonomy-replacement-full-strings.txt
rescript/tests/data/taxonomy-replacement-pass.txt
rescript/tests/data/taxonomy-replacement-regex.txt
rescript/tests/data/trim-test-alignment-fwd.fasta
rescript/tests/data/trim-test-alignment-rev.fasta
rescript/tests/data/trim-test-alignment-with-primers-mess.fasta
rescript/tests/data/trim-test-alignment-with-primers.fasta
rescript/tests/data/trim-test-alignment.fasta
rescript/tests/data/trim-test-sequences-trimmed.fasta
rescript/tests/data/trim-test-sequences.fasta
rescript/tests/data/unitefile.tgz
rescript/tests/data/unitefile_no_dev.tgz
rescript/tests/data/ncbi-dataset/ncbi_dataset/data/assembly_data_report.jsonl
rescript/tests/data/ncbi-dataset/ncbi_dataset/data/dataset_catalog.json
rescript/tests/data/ncbi-dataset/ncbi_dataset/data/GCA_000008865.2/GCA_000008865.2_ASM886v2_genomic.fna
rescript/tests/data/ncbi-dataset/ncbi_dataset/data/GCA_000008865.2/genomic.gff
rescript/tests/data/ncbi-dataset/ncbi_dataset/data/GCA_000008865.2/protein.faa
rescript/tests/data/ncbi-dataset/ncbi_dataset/data/GCA_000008865.2/sequence_report.jsonl
rescript/types/__init__.py
rescript/types/_format.py
rescript/types/_transformer.py
rescript/types/_type.py
rescript/types/methods.py
rescript/types/tests/__init__.py
rescript/types/tests/test_methods.py
rescript/types/tests/test_types_formats_transformers.py
rescript/types/tests/data/derep-test-rna.fasta
rescript/types/tests/data/dna-with-gaps.fasta
rescript/types/tests/data/empty.tsv
rescript/types/tests/data/empty_with_header.tsv
rescript/types/tests/data/rna-with-gaps.fasta
rescript/types/tests/data/silva_taxa.tsv
rescript/types/tests/data/silva_taxamap.tsv
rescript/types/tests/data/silva_taxamap_v132.tsv
rescript/types/tests/data/trash_taxamap.tsv