id	replacements
p__.*; c__	p__LAME-PYHLA; c__
s__uncultured	s__UNCIVILIZED
g__Escherichia.*; s__	g__Escherichia-Shigella; s__
g__\[Salmonella\]	g__Escherichia-Shigella
g__Shigella	g__Escherichia-Shigella