{% extends "base.html" %} {% block content %}
Download sequence-length statistics as a TSV
Sequence Count | Min Length | Max Length | Mean Length | Range | Standard Deviation |
---|---|---|---|---|---|
{{ stats.count }} | {{ stats.min | int }} | {{ stats.max | int }} | {{ stats.mean | round(2, 'common') }} | {{ stats.range | int }} | {{ stats.std | round(2, 'common') }} |
Download seven-number summary as a TSV
Percentile: | {% for percentile in stats.seven_num_summ_percentiles %}{{ (percentile*100) | int }}% | {% endfor %}
---|---|
Length* (nts): | {% for value in stats.seven_num_summ_values %}{{ value | int }} | {% endfor %}
*Values rounded down to nearest whole number.
To BLAST a sequence against the NCBI nt database, click the sequence and then click the View report button on the resulting page.
Download your sequences as a raw FASTA file
Click on a Column header to sort the table.
Feature ID | Sequence | Sequence Length | {% if taxonomy is defined %} {% for name in taxonomy.keys() %}Taxon: {{name}} | {% endfor %} {% endif %} {% if metadata is defined %} {% for name in metadata.columns %}{{ name }} | {% endfor %} {% endif %}||||
---|---|---|---|---|---|---|---|---|
{{ sequence }} | {% if sequence in data %}{{ data[sequence].seq }} | {{ data[sequence].len }} | {% else %}- | - | {% endif %} {% if taxonomy is defined %} {% for member in taxonomy.values() %} {% if sequence in member.index %}{{ member.loc[sequence, "Taxon"] }} | {% else %}- | {% endif %} {% endfor %} {% endif %} {% if metadata is defined %} {% if sequence in metadata.index %} {% for name in metadata.columns %}{{ metadata.loc[sequence, name] }} | {% endfor %} {% else %} {%for name in metadata.columns %}- | {% endfor %} {% endif %} {% endif %}