@article{bokulich2017q2,
  title={q2-longitudinal: Longitudinal and Paired-Sample Analyses of Microbiome Data},
  author={Bokulich, Nicholas A. and Dillon, Matthew R. and Zhang, Yilong and Rideout, Jai Ram and Bolyen, Evan and Li, Huilin and Albert, Paul S. and Caporaso, J. Gregory},
  journal={mSystems},
  volume={3},
  number={6},
  pages={e00219-18},
  year={2018},
  doi={10.1128/mSystems.00219-18}
}

@article{zhang2017multivariate,
  title={A multivariate distance-based analytic framework for microbial interdependence association test in longitudinal study},
  author={Zhang, Yilong and Han, Sung Won and Cox, Laura M and Li, Huilin},
  journal={Genetic epidemiology},
  volume={41},
  number={8},
  pages={769--778},
  year={2017},
  publisher={Wiley Online Library},
  doi={10.1002/gepi.22065}
}

@inproceedings{seabold2010statsmodels,
  title={Statsmodels: Econometric and statistical modeling with python},
  author={Seabold, Skipper and Perktold, Josef},
  booktitle={Proceedings of the 9th Python in Science Conference},
  volume={57},
  pages={61},
  year={2010},
  organization={SciPy society Austin}
}

@article{subramanian2014persistent,
  title={Persistent gut microbiota immaturity in malnourished Bangladeshi children},
  author={Subramanian, Sathish and Huq, Sayeeda and Yatsunenko, Tanya and Haque, Rashidul and Mahfuz, Mustafa and Alam, Mohammed A and Benezra, Amber and DeStefano, Joseph and Meier, Martin F and Muegge, Brian D and Barratt, Michael J and VanArendonk, Laura G and Zhang, Qunyuan and Province, Michael A and Petri, William A and Ahmed, Tahmeed and Gordon, Jeffrey I},
  journal={Nature},
  volume={510},
  number={7505},
  pages={417},
  year={2014},
  publisher={Nature Publishing Group},
  doi={10.1038/nature13421}
}

@article {Bokulich306167,
  author = {Bokulich, Nicholas and Dillon, Matthew and Bolyen, Evan and Kaehler, Benjamin D and Huttley, Gavin A and Caporaso, J Gregory},
  title = {q2-sample-classifier: machine-learning tools for microbiome classification and regression},
  year = {2018},
  doi = {10.21105/joss.00934},
  journal = {Journal of Open Source Software},
  volume={3},
  number={30},
  pages={934}
}

@book{rutherford2011anova,
  title={ANOVA and ANCOVA: a GLM approach},
  author={Rutherford, Andrew},
  year={2011},
  publisher={John Wiley \& Sons}
}
