{% extends "base.html" %} {% block content %}

Sequence Length Statistics

Download sequence-length statistics as a TSV

Sequence Count Min Length Max Length Mean Length Range Standard Deviation
{{ stats.count }} {{ stats.min | int }} {{ stats.max | int }} {{ stats.mean | round(2, 'common') }} {{ stats.range | int }} {{ stats.std | round(2, 'common') }}

Seven-Number Summary of Sequence Lengths

Download seven-number summary as a TSV

{% for percentile in stats.seven_num_summ_percentiles %} {% endfor %} {% for value in stats.seven_num_summ_values %} {% endfor %}
Percentile:{{ (percentile*100) | int }}%
Length* (nts):{{ value | int }}

*Values rounded down to nearest whole number.

Sequence Table

To BLAST a sequence against the NCBI nt database, click the sequence and then click the View report button on the resulting page.

Download your sequences as a raw FASTA file

Click on a Column header to sort the table.

{% if taxonomy is defined %} {% for name in taxonomy.keys() %} {% endfor %} {% endif %} {% if metadata is defined %} {% for name in metadata.columns %} {% endfor %} {% endif %} {% for sequence in display_sequences %} {% if sequence in data %} {% else %} {% endif %} {% if taxonomy is defined %} {% for member in taxonomy.values() %} {% if sequence in member.index %} {% else %} {% endif %} {% endfor %} {% endif %} {% if metadata is defined %} {% if sequence in metadata.index %} {% for name in metadata.columns %} {% endfor %} {% else %} {%for name in metadata.columns %} {% endfor %} {% endif %} {% endif %} {% endfor %}
Feature ID Sequence Sequence LengthTaxon: {{name}}{{ name }}
{{ sequence }}{{ data[sequence].seq }} {{ data[sequence].len }}- -{{ member.loc[sequence, "Taxon"] }}-{{ metadata.loc[sequence, name] }}-
{% endblock %}