lib/python3.12/site-packages/q2_rgi-2026.10.0.dist-info/INSTALLER
lib/python3.12/site-packages/q2_rgi-2026.10.0.dist-info/METADATA
lib/python3.12/site-packages/q2_rgi-2026.10.0.dist-info/RECORD
lib/python3.12/site-packages/q2_rgi-2026.10.0.dist-info/REQUESTED
lib/python3.12/site-packages/q2_rgi-2026.10.0.dist-info/WHEEL
lib/python3.12/site-packages/q2_rgi-2026.10.0.dist-info/direct_url.json
lib/python3.12/site-packages/q2_rgi-2026.10.0.dist-info/entry_points.txt
lib/python3.12/site-packages/q2_rgi-2026.10.0.dist-info/licenses/LICENSE
lib/python3.12/site-packages/q2_rgi-2026.10.0.dist-info/top_level.txt
lib/python3.12/site-packages/q2_rgi/__init__.py
lib/python3.12/site-packages/q2_rgi/__pycache__/__init__.cpython-312.pyc
lib/python3.12/site-packages/q2_rgi/__pycache__/_version.cpython-312.pyc
lib/python3.12/site-packages/q2_rgi/__pycache__/plugin_setup.cpython-312.pyc
lib/python3.12/site-packages/q2_rgi/_version.py
lib/python3.12/site-packages/q2_rgi/assets/rgi/heatmap/index.html
lib/python3.12/site-packages/q2_rgi/card/__init__.py
lib/python3.12/site-packages/q2_rgi/card/__pycache__/__init__.cpython-312.pyc
lib/python3.12/site-packages/q2_rgi/card/__pycache__/database.cpython-312.pyc
lib/python3.12/site-packages/q2_rgi/card/__pycache__/get_gene_lengths.cpython-312.pyc
lib/python3.12/site-packages/q2_rgi/card/__pycache__/heatmap.cpython-312.pyc
lib/python3.12/site-packages/q2_rgi/card/__pycache__/kmer.cpython-312.pyc
lib/python3.12/site-packages/q2_rgi/card/__pycache__/mags.cpython-312.pyc
lib/python3.12/site-packages/q2_rgi/card/__pycache__/partition.cpython-312.pyc
lib/python3.12/site-packages/q2_rgi/card/__pycache__/reads.cpython-312.pyc
lib/python3.12/site-packages/q2_rgi/card/__pycache__/utils.cpython-312.pyc
lib/python3.12/site-packages/q2_rgi/card/database.py
lib/python3.12/site-packages/q2_rgi/card/get_gene_lengths.py
lib/python3.12/site-packages/q2_rgi/card/heatmap.py
lib/python3.12/site-packages/q2_rgi/card/kmer.py
lib/python3.12/site-packages/q2_rgi/card/mags.py
lib/python3.12/site-packages/q2_rgi/card/partition.py
lib/python3.12/site-packages/q2_rgi/card/reads.py
lib/python3.12/site-packages/q2_rgi/card/tests/__init__.py
lib/python3.12/site-packages/q2_rgi/card/tests/__pycache__/__init__.cpython-312.pyc
lib/python3.12/site-packages/q2_rgi/card/tests/__pycache__/test_database.cpython-312.pyc
lib/python3.12/site-packages/q2_rgi/card/tests/__pycache__/test_get_gene_lengths.cpython-312.pyc
lib/python3.12/site-packages/q2_rgi/card/tests/__pycache__/test_heatmap.cpython-312.pyc
lib/python3.12/site-packages/q2_rgi/card/tests/__pycache__/test_kmer.cpython-312.pyc
lib/python3.12/site-packages/q2_rgi/card/tests/__pycache__/test_mags.cpython-312.pyc
lib/python3.12/site-packages/q2_rgi/card/tests/__pycache__/test_partition.cpython-312.pyc
lib/python3.12/site-packages/q2_rgi/card/tests/__pycache__/test_reads.cpython-312.pyc
lib/python3.12/site-packages/q2_rgi/card/tests/__pycache__/test_utils.cpython-312.pyc
lib/python3.12/site-packages/q2_rgi/card/tests/data/DNA_fasta.fasta
lib/python3.12/site-packages/q2_rgi/card/tests/data/DNA_fasta_-.fasta
lib/python3.12/site-packages/q2_rgi/card/tests/data/MANIFEST_mags
lib/python3.12/site-packages/q2_rgi/card/tests/data/MANIFEST_reads_paired
lib/python3.12/site-packages/q2_rgi/card/tests/data/MANIFEST_reads_single
lib/python3.12/site-packages/q2_rgi/card/tests/data/card.tar.bz2
lib/python3.12/site-packages/q2_rgi/card/tests/data/card_test.json
lib/python3.12/site-packages/q2_rgi/card/tests/data/collated/card_allele_annotation/sample1/allele_mapping_data.txt
lib/python3.12/site-packages/q2_rgi/card/tests/data/collated/card_allele_annotation/sample1/overall_mapping_stats.txt
lib/python3.12/site-packages/q2_rgi/card/tests/data/collated/card_allele_annotation/sample1/sorted.length_100.bam
lib/python3.12/site-packages/q2_rgi/card/tests/data/collated/card_allele_annotation/sample2/allele_mapping_data.txt
lib/python3.12/site-packages/q2_rgi/card/tests/data/collated/card_allele_annotation/sample2/overall_mapping_stats.txt
lib/python3.12/site-packages/q2_rgi/card/tests/data/collated/card_allele_annotation/sample2/sorted.length_100.bam
lib/python3.12/site-packages/q2_rgi/card/tests/data/collated/card_annotation/sample1/e026af61-d911-4de3-a957-7e8bf837f30d/amr_annotation.json
lib/python3.12/site-packages/q2_rgi/card/tests/data/collated/card_annotation/sample1/e026af61-d911-4de3-a957-7e8bf837f30d/amr_annotation.txt
lib/python3.12/site-packages/q2_rgi/card/tests/data/collated/card_annotation/sample2/aa447c99-ecd9-4c4a-a53b-4df6999815dd/amr_annotation.json
lib/python3.12/site-packages/q2_rgi/card/tests/data/collated/card_annotation/sample2/aa447c99-ecd9-4c4a-a53b-4df6999815dd/amr_annotation.txt
lib/python3.12/site-packages/q2_rgi/card/tests/data/collated/card_annotation/sample2/f5a16381-ea80-49f9-875e-620f333a9293/amr_annotation.json
lib/python3.12/site-packages/q2_rgi/card/tests/data/collated/card_annotation/sample2/f5a16381-ea80-49f9-875e-620f333a9293/amr_annotation.txt
lib/python3.12/site-packages/q2_rgi/card/tests/data/collated/card_gene_annotation/sample1/gene_mapping_data.txt
lib/python3.12/site-packages/q2_rgi/card/tests/data/collated/card_gene_annotation/sample2/gene_mapping_data.txt
lib/python3.12/site-packages/q2_rgi/card/tests/data/gene_length_allele.txt
lib/python3.12/site-packages/q2_rgi/card/tests/data/gene_length_gene.txt
lib/python3.12/site-packages/q2_rgi/card/tests/data/kmer_json_test.json
lib/python3.12/site-packages/q2_rgi/card/tests/data/kmer_txt_test.txt
lib/python3.12/site-packages/q2_rgi/card/tests/data/output.allele_mapping_data.txt
lib/python3.12/site-packages/q2_rgi/card/tests/data/output.gene_mapping_data.txt
lib/python3.12/site-packages/q2_rgi/card/tests/data/output.mags.txt
lib/python3.12/site-packages/q2_rgi/card/tests/data/output.overall_mapping_stats.txt
lib/python3.12/site-packages/q2_rgi/card/tests/data/output.sorted.length_100.bam
lib/python3.12/site-packages/q2_rgi/card/tests/data/partitioned/annotate_mags_output_1/sample1/bin1/amr_annotation.json
lib/python3.12/site-packages/q2_rgi/card/tests/data/partitioned/annotate_mags_output_1/sample1/bin1/amr_annotation.txt
lib/python3.12/site-packages/q2_rgi/card/tests/data/partitioned/annotate_mags_output_2/sample2/bin1/amr_annotation.json
lib/python3.12/site-packages/q2_rgi/card/tests/data/partitioned/annotate_mags_output_2/sample2/bin1/amr_annotation.txt
lib/python3.12/site-packages/q2_rgi/card/tests/data/partitioned/annotate_mags_output_2/sample2/bin2/amr_annotation.json
lib/python3.12/site-packages/q2_rgi/card/tests/data/partitioned/annotate_mags_output_2/sample2/bin2/amr_annotation.txt
lib/python3.12/site-packages/q2_rgi/card/tests/data/partitioned/annotate_reads_allele_output_1/sample1/allele_mapping_data.txt
lib/python3.12/site-packages/q2_rgi/card/tests/data/partitioned/annotate_reads_allele_output_1/sample1/overall_mapping_stats.txt
lib/python3.12/site-packages/q2_rgi/card/tests/data/partitioned/annotate_reads_allele_output_1/sample1/sorted.length_100.bam
lib/python3.12/site-packages/q2_rgi/card/tests/data/partitioned/annotate_reads_allele_output_2/sample2/allele_mapping_data.txt
lib/python3.12/site-packages/q2_rgi/card/tests/data/partitioned/annotate_reads_allele_output_2/sample2/overall_mapping_stats.txt
lib/python3.12/site-packages/q2_rgi/card/tests/data/partitioned/annotate_reads_allele_output_2/sample2/sorted.length_100.bam
lib/python3.12/site-packages/q2_rgi/card/tests/data/partitioned/annotate_reads_gene_output_1/sample1/gene_mapping_data.txt
lib/python3.12/site-packages/q2_rgi/card/tests/data/partitioned/annotate_reads_gene_output_2/sample2/gene_mapping_data.txt
lib/python3.12/site-packages/q2_rgi/card/tests/data/partitioned/kmer_analysis_mags_1/sample1/bin1/61mer_analysis.json
lib/python3.12/site-packages/q2_rgi/card/tests/data/partitioned/kmer_analysis_mags_1/sample1/bin1/61mer_analysis_rgi_summary.txt
lib/python3.12/site-packages/q2_rgi/card/tests/data/partitioned/kmer_analysis_mags_2/sample2/bin1/61mer_analysis.json
lib/python3.12/site-packages/q2_rgi/card/tests/data/partitioned/kmer_analysis_mags_2/sample2/bin1/61mer_analysis_rgi_summary.txt
lib/python3.12/site-packages/q2_rgi/card/tests/data/partitioned/kmer_analysis_mags_2/sample2/bin2/61mer_analysis.json
lib/python3.12/site-packages/q2_rgi/card/tests/data/partitioned/kmer_analysis_mags_2/sample2/bin2/61mer_analysis_rgi_summary.txt
lib/python3.12/site-packages/q2_rgi/card/tests/data/partitioned/kmer_analysis_reads_allele_1/sample1/61mer_analysis.allele.txt
lib/python3.12/site-packages/q2_rgi/card/tests/data/partitioned/kmer_analysis_reads_allele_1/sample1/61mer_analysis.json
lib/python3.12/site-packages/q2_rgi/card/tests/data/partitioned/kmer_analysis_reads_allele_2/sample2/61mer_analysis.allele.txt
lib/python3.12/site-packages/q2_rgi/card/tests/data/partitioned/kmer_analysis_reads_allele_2/sample2/61mer_analysis.json
lib/python3.12/site-packages/q2_rgi/card/tests/data/partitioned/kmer_analysis_reads_gene_1/sample1/61mer_analysis.gene.txt
lib/python3.12/site-packages/q2_rgi/card/tests/data/partitioned/kmer_analysis_reads_gene_1/sample1/61mer_analysis.json
lib/python3.12/site-packages/q2_rgi/card/tests/data/partitioned/kmer_analysis_reads_gene_2/sample2/61mer_analysis.gene.txt
lib/python3.12/site-packages/q2_rgi/card/tests/data/partitioned/kmer_analysis_reads_gene_2/sample2/61mer_analysis.json
lib/python3.12/site-packages/q2_rgi/card/tests/data/reads_paired/MANIFEST
lib/python3.12/site-packages/q2_rgi/card/tests/data/reads_paired/metadata.yml
lib/python3.12/site-packages/q2_rgi/card/tests/data/reads_paired/sample1_00_L001_R1_001.fastq.gz
lib/python3.12/site-packages/q2_rgi/card/tests/data/reads_paired/sample1_00_L001_R2_001.fastq.gz
lib/python3.12/site-packages/q2_rgi/card/tests/data/reads_single/MANIFEST
lib/python3.12/site-packages/q2_rgi/card/tests/data/reads_single/metadata.yml
lib/python3.12/site-packages/q2_rgi/card/tests/data/reads_single/sample1_00_L001_R1_001.fastq.gz
lib/python3.12/site-packages/q2_rgi/card/tests/data/rgi_output.json
lib/python3.12/site-packages/q2_rgi/card/tests/data/rgi_output.txt
lib/python3.12/site-packages/q2_rgi/card/tests/data/wildcard_data.tar.bz2
lib/python3.12/site-packages/q2_rgi/card/tests/test_database.py
lib/python3.12/site-packages/q2_rgi/card/tests/test_get_gene_lengths.py
lib/python3.12/site-packages/q2_rgi/card/tests/test_heatmap.py
lib/python3.12/site-packages/q2_rgi/card/tests/test_kmer.py
lib/python3.12/site-packages/q2_rgi/card/tests/test_mags.py
lib/python3.12/site-packages/q2_rgi/card/tests/test_partition.py
lib/python3.12/site-packages/q2_rgi/card/tests/test_reads.py
lib/python3.12/site-packages/q2_rgi/card/tests/test_utils.py
lib/python3.12/site-packages/q2_rgi/card/utils.py
lib/python3.12/site-packages/q2_rgi/citations.bib
lib/python3.12/site-packages/q2_rgi/plugin_setup.py
lib/python3.12/site-packages/q2_rgi/types/__init__.py
lib/python3.12/site-packages/q2_rgi/types/__pycache__/__init__.cpython-312.pyc
lib/python3.12/site-packages/q2_rgi/types/__pycache__/_format.cpython-312.pyc
lib/python3.12/site-packages/q2_rgi/types/__pycache__/_transformer.cpython-312.pyc
lib/python3.12/site-packages/q2_rgi/types/__pycache__/_type.cpython-312.pyc
lib/python3.12/site-packages/q2_rgi/types/_format.py
lib/python3.12/site-packages/q2_rgi/types/_transformer.py
lib/python3.12/site-packages/q2_rgi/types/_type.py
lib/python3.12/site-packages/q2_rgi/types/tests/__init__.py
lib/python3.12/site-packages/q2_rgi/types/tests/__pycache__/__init__.cpython-312.pyc
lib/python3.12/site-packages/q2_rgi/types/tests/__pycache__/test_types_formats_transformers.cpython-312.pyc
lib/python3.12/site-packages/q2_rgi/types/tests/data/61mer_analysis.allele.txt
lib/python3.12/site-packages/q2_rgi/types/tests/data/61mer_analysis.gene.txt
lib/python3.12/site-packages/q2_rgi/types/tests/data/61mer_analysis_rgi_summary.txt
lib/python3.12/site-packages/q2_rgi/types/tests/data/DNA_fasta.fasta
lib/python3.12/site-packages/q2_rgi/types/tests/data/DNA_fasta_-.fasta
lib/python3.12/site-packages/q2_rgi/types/tests/data/amr_annotation_invalid.json
lib/python3.12/site-packages/q2_rgi/types/tests/data/card_allele_annotation/sample1/allele_mapping_data.txt
lib/python3.12/site-packages/q2_rgi/types/tests/data/card_allele_annotation/sample1/overall_mapping_stats.txt
lib/python3.12/site-packages/q2_rgi/types/tests/data/card_allele_annotation/sample1/sorted.length_100.bam
lib/python3.12/site-packages/q2_rgi/types/tests/data/card_allele_annotation/sample2/allele_mapping_data.txt
lib/python3.12/site-packages/q2_rgi/types/tests/data/card_allele_annotation/sample2/overall_mapping_stats.txt
lib/python3.12/site-packages/q2_rgi/types/tests/data/card_allele_annotation/sample2/sorted.length_100.bam
lib/python3.12/site-packages/q2_rgi/types/tests/data/card_annotation/sample1/e026af61-d911-4de3-a957-7e8bf837f30d/amr_annotation.json
lib/python3.12/site-packages/q2_rgi/types/tests/data/card_annotation/sample1/e026af61-d911-4de3-a957-7e8bf837f30d/amr_annotation.txt
lib/python3.12/site-packages/q2_rgi/types/tests/data/card_annotation/sample2/aa447c99-ecd9-4c4a-a53b-4df6999815dd/amr_annotation.json
lib/python3.12/site-packages/q2_rgi/types/tests/data/card_annotation/sample2/aa447c99-ecd9-4c4a-a53b-4df6999815dd/amr_annotation.txt
lib/python3.12/site-packages/q2_rgi/types/tests/data/card_annotation/sample2/f5a16381-ea80-49f9-875e-620f333a9293/amr_annotation.json
lib/python3.12/site-packages/q2_rgi/types/tests/data/card_annotation/sample2/f5a16381-ea80-49f9-875e-620f333a9293/amr_annotation.txt
lib/python3.12/site-packages/q2_rgi/types/tests/data/card_gene_annotation/sample1/gene_mapping_data.txt
lib/python3.12/site-packages/q2_rgi/types/tests/data/card_gene_annotation/sample2/gene_mapping_data.txt
lib/python3.12/site-packages/q2_rgi/types/tests/data/card_kmer_analysis_mags/sample1/bin1/61mer_analysis_rgi_summary.txt
lib/python3.12/site-packages/q2_rgi/types/tests/data/card_kmer_analysis_mags/sample1/e026af61-d911-4de3-a957-7e8bf837f30d/61mer_analysis.json
lib/python3.12/site-packages/q2_rgi/types/tests/data/card_kmer_analysis_mags/sample1/e026af61-d911-4de3-a957-7e8bf837f30d/61mer_analysis_rgi_summary.txt
lib/python3.12/site-packages/q2_rgi/types/tests/data/card_kmer_analysis_mags/sample2/aa447c99-ecd9-4c4a-a53b-4df6999815dd/61mer_analysis.json
lib/python3.12/site-packages/q2_rgi/types/tests/data/card_kmer_analysis_mags/sample2/aa447c99-ecd9-4c4a-a53b-4df6999815dd/61mer_analysis_rgi_summary.txt
lib/python3.12/site-packages/q2_rgi/types/tests/data/card_kmer_analysis_mags/sample2/f5a16381-ea80-49f9-875e-620f333a9293/61mer_analysis.json
lib/python3.12/site-packages/q2_rgi/types/tests/data/card_kmer_analysis_mags/sample2/f5a16381-ea80-49f9-875e-620f333a9293/61mer_analysis_rgi_summary.txt
lib/python3.12/site-packages/q2_rgi/types/tests/data/card_reads_allele_kmer_analysis/sample1/61mer_analysis.allele.txt
lib/python3.12/site-packages/q2_rgi/types/tests/data/card_reads_allele_kmer_analysis/sample1/61mer_analysis.json
lib/python3.12/site-packages/q2_rgi/types/tests/data/card_reads_allele_kmer_analysis/sample2/61mer_analysis.allele.txt
lib/python3.12/site-packages/q2_rgi/types/tests/data/card_reads_allele_kmer_analysis/sample2/61mer_analysis.json
lib/python3.12/site-packages/q2_rgi/types/tests/data/card_reads_gene_kmer_analysis/sample1/61mer_analysis.gene.txt
lib/python3.12/site-packages/q2_rgi/types/tests/data/card_reads_gene_kmer_analysis/sample2/61mer_analysis.gene.txt
lib/python3.12/site-packages/q2_rgi/types/tests/data/card_test.json
lib/python3.12/site-packages/q2_rgi/types/tests/data/card_test_dna.fasta
lib/python3.12/site-packages/q2_rgi/types/tests/data/card_test_protein.fasta
lib/python3.12/site-packages/q2_rgi/types/tests/data/empty_dict.json
lib/python3.12/site-packages/q2_rgi/types/tests/data/gene_length_allele.txt
lib/python3.12/site-packages/q2_rgi/types/tests/data/gene_length_gene.txt
lib/python3.12/site-packages/q2_rgi/types/tests/data/index-for-model-sequences-test.txt
lib/python3.12/site-packages/q2_rgi/types/tests/data/kmer_json_test.json
lib/python3.12/site-packages/q2_rgi/types/tests/data/kmer_txt_test.txt
lib/python3.12/site-packages/q2_rgi/types/tests/data/mags_61mer_analysis.json
lib/python3.12/site-packages/q2_rgi/types/tests/data/reads_61mer_analysis.json
lib/python3.12/site-packages/q2_rgi/types/tests/data/rgi_output.json
lib/python3.12/site-packages/q2_rgi/types/tests/data/rgi_output.txt
lib/python3.12/site-packages/q2_rgi/types/tests/data/rgi_output_dna.fna
lib/python3.12/site-packages/q2_rgi/types/tests/data/rgi_output_protein.fna
lib/python3.12/site-packages/q2_rgi/types/tests/data/tabulated_df_allele.txt
lib/python3.12/site-packages/q2_rgi/types/tests/data/tabulated_df_mags.txt
lib/python3.12/site-packages/q2_rgi/types/tests/test_types_formats_transformers.py
