# ----------------------------------------------------------------------------
# Copyright (c) 2023, QIIME 2 development team.
#
# Distributed under the terms of the Modified BSD License.
#
# The full license is in the file LICENSE, distributed with this software.
# ----------------------------------------------------------------------------
from ._formats import (
    ProteinMultipleProfileHmmFileFmt,
    ProteinSingleProfileHmmFileFmt,
    RNAMultipleProfileHmmFileFmt,
    RNASingleProfileHmmFileFmt,
    DNAMultipleProfileHmmFileFmt,
    DNASingleProfileHmmFileFmt,
    PressedProfileHmmsDirectoryFmt,
    ProteinSingleProfileHmmDirectoryFmt,
    ProteinMultipleProfileHmmDirectoryFmt,
    DNASingleProfileHmmDirectoryFmt,
    DNAMultipleProfileHmmDirectoryFmt,
    RNASingleProfileHmmDirectoryFmt,
    RNAMultipleProfileHmmDirectoryFmt
)
from ._types import (
    ProfileHMM,
    SingleProtein, SingleDNA, SingleRNA,
    MultipleProtein, MultipleDNA, MultipleRNA,
    PressedRNA, PressedDNA, PressedProtein
)

__all__ = [
    "ProteinMultipleProfileHmmFileFmt",
    "ProteinSingleProfileHmmFileFmt",
    "RNAMultipleProfileHmmFileFmt",
    "RNASingleProfileHmmFileFmt",
    "DNAMultipleProfileHmmFileFmt",
    "DNASingleProfileHmmFileFmt",
    "ProfileHmmBinaryFileFmt",
    "PressedProfileHmmsDirectoryFmt",
    "ProfileHmmFileFmt",
    "ProteinSingleProfileHmmDirectoryFmt",
    "ProteinMultipleProfileHmmDirectoryFmt",
    "DNASingleProfileHmmDirectoryFmt",
    "DNAMultipleProfileHmmDirectoryFmt",
    "RNASingleProfileHmmDirectoryFmt",
    "RNAMultipleProfileHmmDirectoryFmt",
    "ProfileHMM",
    "SingleProtein", "SingleDNA", "SingleRNA",
    "MultipleProtein", "MultipleDNA", "MultipleRNA",
    "PressedRNA", "PressedDNA", "PressedProtein"
]
